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DNA extraction, PCR amplification and 16 S rRNA sequencing from fecal and ruminal fluid samples The Macherey Nagel NucleoSpin Tissue commercial kit was used to extract the DNA, and 16 S rRNA gene sequencing was performed on the MiSeq platform (2 250 bp

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Gyetko MR, Hsu CH, Wilkinson CC, Patel S, Young E (1993) Monocyte 1 alpha-hydroxylase regulation: induction by inflammatory cytokines and suppression by dexamethasone and uremia toxin

Genes encoding WRKY transcription factors, PR-proteins, a phenylalanine ammonia-lyase (PAL) and a GST were up-regulated in infected berries (Agudelo-Romero et al., Vitis ) species may resist fungal infections by accumulating secondary metabolites like stilbenoid phytoalexins (trans-resveratrols)

The metabolite concentrations in tissues or intestinal contents were calculated using the following equation: concentration (mol g 1 ) = concentration of extracted sample (M) volume of extraction solution (l) / tissue weight (mg)