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REI501 groups shared 21 DEGs ( Figure 4a ), 11 DEGs including three upregulated ( GCLC , GST , and 5-OPase ) and eight downregulated showed the same trend, 10 other DEGs were reversed in both groups

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www.R-project.org), resulting in the final output file titled unique_genes_matrix.tsv. This matrix contained quantified gene-specific peptides filtered using a global false discovery rate (FDR) of 1%, applying both global q-values for protein groups and global as well as run-specific q-values for precursors